TAMU_GH_TBr163K16r594, TAMU_GH_TBr163K16r594 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBr163K16r594
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i47720Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:100655832..100655932 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:96628851..96628951 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1219_A05supercontigscaffold1219_A05:150982..151082 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:107447255..107447355 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:108960661..108960761 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:107551674..107551774 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:105506408..105506508 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:100813791..100813891 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:105741317..105741417 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:103149452..103149552 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:111822867..111822967 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:103675706..103675806 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:109324884..109324984 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:20444002..20444102 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:2080333..2080433 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:2013961..2014061 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A2.72SNPi47720GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A20.74i47720GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A0i47720GhView
Sequence
>TAMU_GH_TBr163K16r594 ID=TAMU_GH_TBr163K16r594; Name=TAMU_GH_TBr163K16r594; organism=Gossypium sp.; type=genetic_marker; length=105bp
CGATTCAGCGCCCTCATGATCCGCGCGTTCGTCGTAGTAGAGGGGAATTT
[G/T]CGCTTCTAGTCCCTCTTTTTATATTAGCCTCTGATTGAGTTCGTT
CGAGA