TAMU_GH_TBh118H05r160, TAMU_GH_TBh118H05r160 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh118H05r160
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i47236Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:95175287..95175387 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:4538075..4538175 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1837.1supercontigscaffold1837.1:121700..121801 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:78718306..78718406 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:103187382..103187482 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:103486002..103486102 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:100817525..100817626 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:99442404..99442505 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:95323181..95323281 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:97374131..97374231 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:100115294..100115394 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:104927883..104927983 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:97507408..97507508 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:103266525..103266625 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:87625300..87625401 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:97189515..97189615 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
13-79 x TM-1, F2 (2015 SNP)AD_ch02_At.02N/AN/A36.8i47236GhView
2Suvin x BCS23-18-7, F2 (2019)AD_ch02_At.02N/AAD_chr.0240.76i47236GhView
Sequence
>TAMU_GH_TBh118H05r160 ID=TAMU_GH_TBh118H05r160; Name=TAMU_GH_TBh118H05r160; organism=Gossypium sp.; type=genetic_marker; length=105bp
GCTGCCTGCCACCAAATAATGTGACCATGCATACTTTATATCATTGAAAA
[A/G]ATATTAATGTCAAATAAATCTAGCAATTTTTGCTCTGCGTATATT
TGCTT