TAMU_GH_TBh118E18r102, TAMU_GH_TBh118E18r102 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh118E18r102
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i47214Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:51344243..51344243 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:53874933..53875033 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:5814002..5814102 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:49455188..49455288 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:53851502..53851602 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56284100..56284198 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:55580775..55580875 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56363438..56363538 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:54533978..54534078 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:52885818..52885918 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017634.1chromosomeCM017634.1:54607098..54607198 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:57510117..57510217 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:55195758..55195858 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:56721198..56721298 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:51925585..51925685 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:52250262..52250362 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A104.95i47214GhView
20-153 x sGK9708, RIL (2017)AD_ch26_Dt.12N/A37.65i47214GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A106.1i47214GhView
Sequence
>TAMU_GH_TBh118E18r102 ID=TAMU_GH_TBh118E18r102; Name=TAMU_GH_TBh118E18r102; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATTATGTCACACGAGATTTGATGTACCGTTAAATGGTTAAATAACAATTA
[A/C]AATAACTTTATTGATATAAAATTAATAATTTAAAGACATTATTAA
AATAT