TAMU_GH_TBh116F19r355, TAMU_GH_TBh116F19r355 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh116F19r355
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i46990Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:47032163..47032163 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018209.1chromosomeCM018209.1:99428940..99429040 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:108056631..108056731 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:31119467..31119567 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4000.1supercontigscaffold4000.1:23252..23352 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:84940603..84940703 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:103171684..103171784 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:106353393..106353493 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:105987223..105987323 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:102033368..102033468 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:100026786..100026886 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:101300689..101300789 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:99560493..99560593 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:109088770..109088870 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:100293205..100293305 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:107806846..107806946 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:111376804..111376904 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:112110054..112110154 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:84013697..84013797 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:26874828..26874928 +Gossypium gossypioides (D6) genome ISU_v1n/a
E08chromosomeE08:99058921..99059021 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeChr08:38760596..38760696 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2017)AD_ch24_Dt.08N/A38.47i46990GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch08_At.08N/A65.18i46990GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch08_At.08N/A76.8i46990GhView
Sequence
>TAMU_GH_TBh116F19r355 ID=TAMU_GH_TBh116F19r355; Name=TAMU_GH_TBh116F19r355; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGACAATGTGGTTTGATACCACACCAACCAATCAAAGCAAGCTTCATGAC
[C/T]ATGGTAATTTTGAACATATTGCCATCATCCAATATAAATTGAAGT
TTTAA