TAMU_GH_TBh115I01r276, TAMU_GH_TBh115I01r276 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh115I01r276
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i46911Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:47172552..47172552 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:49612186..49612286 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:10052310..10052410 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:44561075..44561175 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:45968983..45969083 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:49134462..49134562 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:51987809..51987909 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:50944150..50944250 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:52107451..52107551 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:49888511..49888611 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:48917261..48917361 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:50088560..50088660 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:49961295..49961395 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:52796500..52796600 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:50615573..50615673 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:52064117..52064217 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:47725074..47725174 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:47870866..47870966 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:37217785..37217885 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:34725969..34726069 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:49254648..49254748 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08_3396500chromosomeChr08_3396500:26868..26968 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:32806653..32806753 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A93.17i46911GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A87.5i46911GhView
Sequence
>TAMU_GH_TBh115I01r276 ID=TAMU_GH_TBh115I01r276; Name=TAMU_GH_TBh115I01r276; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTCTCCCACTCTCTTTAGCCTCATTCCATCTCTCCTAACTTTCCCTGGGC
[A/C]TTTAATATGTATCGGCATAACTTATCTAGTTGTATTTTGGTGTAT
GATGA