TAMU_GH_TBh114P22f384, TAMU_GH_TBh114P22f384 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh114P22f384
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i60342Gb
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:39384962..39384962 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:41761279..41761379 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:17894154..17894254 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:38181021..38181121 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:41115790..41115890 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:44165895..44165995 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:43319889..43319989 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:44138104..44138204 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:41993255..41993355 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:41008184..41008284 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:42287135..42287235 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:42171848..42171948 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:44533342..44533442 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:42859951..42860051 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:44108041..44108141 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:39896172..39896272 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08_5118048chromosomeChr08_5118048:2442..2542 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:41361112..41361212 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A66.89i60342GbView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A70.88i60342GbView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A68.6i60342GbView
Sequence
>TAMU_GH_TBh114P22f384 ID=TAMU_GH_TBh114P22f384; Name=TAMU_GH_TBh114P22f384; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTACACCAAGTGAATTGTGGGCCCTGAAAACCCAAATCATGAACATTGGT
[A/G]GACTTTAAGAAATTATCACAAAGCGGAAACCTCATTCCTCTAATC
TGTCC