TAMU_GH_TBh107C18f178, TAMU_GH_TBh107C18f178 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh107C18f178
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45991Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeChr13:48649629..48649629 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018227.1chromosomeCM018227.1:52940612..52940712 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr13chromosomeDt_chr13:21442820..21442920 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:53103214..53103314 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:56110366..56110466 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:57077413..57077513 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:56257916..56258016 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:52962322..52962422 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold2783supercontigScaffold2783:5796..5896 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:53946167..53946267 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:53682185..53682285 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:56911913..56912013 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:53569958..53570058 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:57337918..57338018 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:56086899..56086999 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:33989197..33989297 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch18_Dt.13N/A91.21i45991GhView
20-153 x sGK9708, RIL (2017)AD_ch18_Dt.13N/A36.06i45991GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch18_Dt.13N/A80.11i45991GhView
Sequence
>TAMU_GH_TBh107C18f178 ID=TAMU_GH_TBh107C18f178; Name=TAMU_GH_TBh107C18f178; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGTAGCCCTAAATATCGTCTGTGATCTAATAGGACATCAACACCCAAAAG
[C/T]GAACAAATATTTTTGTCAAATATGCAACCTAGTGTTAGAGTTGAA
CATAA