TAMU_GH_TBh106P16f67, TAMU_GH_TBh106P16f67 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh106P16f67
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45976Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:4757284..4757384 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:5293841..5293941 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3017.1supercontigscaffold3017.1:100400..100500 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:4795955..4796055 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:4894824..4894924 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:4683067..4683167 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:5018366..5018466 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:4884161..4884261 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:4730583..4730683 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:4712990..4713090 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:4870407..4870507 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:4923027..4923127 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:4802133..4802233 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:12450043..12450142 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:5138505..5138605 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:125755005..125755105 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch02_At.02N/A85.77SNPi45976GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch02_At.02N/A74.5i45976GhView
Sequence
>TAMU_GH_TBh106P16f67 ID=TAMU_GH_TBh106P16f67; Name=TAMU_GH_TBh106P16f67; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGTCACCAGTTTATGCACCACCAAAGAAAGAGAAGCCAGAACCAAAACCA
[C/T]CAATGTACGAACCTCCAAAGAAACCTCCTGTACATAAGCCACCAT
ATGGT