TAMU_GH_TBh106K13r315, TAMU_GH_TBh106K13r315 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh106K13r315
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45937Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:6551810..6551810 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018212.1chromosomeCM018212.1:7455596..7455678 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:59158130..59158212 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:6734135..6734217 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:9566898..9566980 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3616.1supercontigscaffold3616.1:14794..14876 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:5254896..5254978 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:7041620..7041702 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:7627541..7627623 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:7282192..7282274 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:7504407..7504489 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:7678445..7678527 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:7273650..7273732 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:7471465..7471547 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:7607721..7607803 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:7689924..7690006 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:7553764..7553846 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:7803729..7803811 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:7707431..7707513 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:56649465..56649547 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:7421857..7421939 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:6759233..6759315 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:5995142..5995224 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:6509345..6509427 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:6945625..6945707 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:5121489..5121571 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07_3959930chromosomeChr07_3959930:276..358 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:8304348..8304429 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:6560919..6561001 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:177128814..177128896 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2017)AD_ch11_At.11N/A36.88i45937GhView
Sequence
>TAMU_GH_TBh106K13r315 ID=TAMU_GH_TBh106K13r315; Name=TAMU_GH_TBh106K13r315; organism=Gossypium sp.; type=genetic_marker; length=87bp
TTGGGCTACTCAAATTTCTACTTTATCTCAGAGTAAAATAGCCTAAAAAG
[G/T]AGACCATATGCCGTTTCTTCCATTTCTAGCCA