TAMU_GH_TBh090N16r612, TAMU_GH_TBh090N16r612 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh090N16r612
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i44222Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:52167671..52167671 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:54691527..54691627 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:4970554..4970653 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D12chromosomeD12:54667878..54667978 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:57114487..57114587 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:56392587..56392687 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:57194113..57194213 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:55359901..55360001 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold3473supercontigScaffold3473:6414..6514 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:53681788..53681888 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:55502986..55503086 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:55467383..55467483 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:55430705..55430805 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:58387545..58387645 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:56004228..56004328 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:57584465..57584565 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:52767923..52768022 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:82798563..82798661 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:53073277..53073376 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:41154569..41154667 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:39302428..39302526 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:54692691..54692790 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:38268940..38269039 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:36613308..36613407 -Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:86412928..86413026 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A0i44222GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A111.04i44222GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A111.6i44222GhView
Sequence
>TAMU_GH_TBh090N16r612 ID=TAMU_GH_TBh090N16r612; Name=TAMU_GH_TBh090N16r612; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTAGCTGATTGAGCTAAAGCATTACCAAGGAAAAAATAAAATAAGAAGAA
[A/G]AAAAAAGAAGGAATTCTTTAATGTTATTGTAATTTGATTGGAAAC
TGTGC