TAMU_GH_TBh081F15f686, TAMU_GH_TBh081F15f686 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh081F15f686
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i43171Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:4999788..4999788 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:5282516..5282616 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:5082065..5082165 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr2chromosomeAt_chr2:42797272..42797372 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:4992082..4992182 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:5827783..5827883 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:5590803..5590903 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:5799397..5799497 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:5323949..5324049 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:5297926..5298026 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:5265196..5265296 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017654.1chromosomeCM017654.1:5422369..5422469 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:5393368..5393468 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:5900956..5901056 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:4968333..4968433 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:5525869..5525969 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Unplaced_6335330chromosomeUnplaced_6335330:2271..2371 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A72.52SNPi43171GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch25_Dt.06N/A97.55i43171GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A78.9i43171GhView
Sequence
>TAMU_GH_TBh081F15f686 ID=TAMU_GH_TBh081F15f686; Name=TAMU_GH_TBh081F15f686; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTTTCCATGATTTCTGCATGCATAGTTTCGAACCGGCTTACATGATAGGT
[A/G]ACGATGATACATATCCTCTAACAACACCACTACATTAGGTATTAT
GAACG