TAMU_GH_TBh061J04f408, TAMU_GH_TBh061J04f408 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh061J04f408
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i41410Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:32073803..32073903 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:32968913..32969013 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr9chromosomeDt_chr9:39620374..39620474 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:30195209..30195309 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:32235876..32235976 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:32031855..32031955 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:33164349..33164449 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:32268289..32268389 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:30888332..30888432 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:32403194..32403294 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:32547504..32547604 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:33024276..33024376 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:32303641..32303740 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:33625976..33626076 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:33948214..33948314 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:33277786..33277886 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A75.13SNPi41410GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A87.68i41410GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A68.2i41410GhView
Sequence
>TAMU_GH_TBh061J04f408 ID=TAMU_GH_TBh061J04f408; Name=TAMU_GH_TBh061J04f408; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGTGTGAGAGATCATAATGGTGAATGGATCATTGCATTCGCGAAACATTT
[A/G]AGCAATTGCACCATTTTAGAGGCAGAGCTTTGGGGAATACTAAAT
GGGCT