TAMU_GH_TBh059H02r330, TAMU_GH_TBh059H02r330 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh059H02r330
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i41205Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:47381533..47381533 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018222.1chromosomeCM018222.1:50610390..50610490 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:46769294..46769394 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:14277493..14277593 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:8216937..8217037 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:50582642..50582742 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:53217580..53217680 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:54076947..54077047 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:53112014..53112114 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:50407565..50407665 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:50574471..50574571 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:52650188..52650288 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:52018791..52018891 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:53923594..53923694 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:51209766..51209866 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:53718298..53718398 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:47656709..47656809 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:49070654..49070754 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch24_Dt.08N/A68.78SNPi41205GhView
20-153 x sGK9708, RIL (2017)AD_ch24_Dt.08N/A31.56i41205GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch24_Dt.08N/A54.32i41205GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch24_Dt.08N/A71.6i41205GhView
Sequence
>TAMU_GH_TBh059H02r330 ID=TAMU_GH_TBh059H02r330; Name=TAMU_GH_TBh059H02r330; organism=Gossypium sp.; type=genetic_marker; length=105bp
GATACATGCGATGTGAAAGGTTTTGGTTGCCACAACTGATATATATGTGT
[C/T]TTATTAAATTGCTCCAAAGATACAAAATTTACTAATTAAAAGATA
AACTT