TAMU_GH_TBh052J24f303, TAMU_GH_TBh052J24f303 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh052J24f303
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i40567Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:2891403..2891403 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:3152232..3152332 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:2916432..2916532 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:57031771..57031871 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold3638.1supercontigscaffold3638.1:17814..17914 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:2577168..2577268 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:3464738..3464838 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:3307785..3307885 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:3444863..3444963 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:3320858..3320958 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:3238136..3238236 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:3207472..3207572 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:3268024..3268124 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:3430171..3430271 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:3261708..3261808 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:3536318..3536418 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:2932424..2932520 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:3170084..3170184 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:3078617..3078716 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:2563175..2563276 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:3133011..3133111 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:2372092..2372192 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:2731179..2731279 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A84.35SNPi40567GhView
20-153 x sGK9708, RIL (2017)AD_ch25_Dt.06N/A35.84i40567GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch25_Dt.06N/A110.81i40567GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A90.2i40567GhView
Sequence
>TAMU_GH_TBh052J24f303 ID=TAMU_GH_TBh052J24f303; Name=TAMU_GH_TBh052J24f303; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGCCTGTCCCTAAATATCGATACTAATTTAATTAAAGCTCAATCGAAGAT
[G/T]GATTTTAAATTAAGATAAATTAATTAGATTTAGAGTATAGTTATG
AATTT