TAMU_GH_TBh051O20r760, TAMU_GH_TBh051O20r760 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh051O20r760
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i40482Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:5649646..5649646 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:5878046..5878146 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:5735320..5735420 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr10chromosomeDt_chr10:25025016..25025116 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:5629469..5629569 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:6468108..6468208 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6231042..6231142 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6452269..6452369 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:5972417..5972517 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:5893497..5893597 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:5860585..5860685 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:6467002..6467102 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6055623..6055723 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:6004613..6004713 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:6527390..6527490 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:5620990..5621090 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:6159055..6159155 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:5405984..5406084 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:4997945..4998045 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:4536790..4536890 +Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A69.01SNPi40482GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch25_Dt.06N/A4.91i40482GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch25_Dt.06N/A94.56i40482GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A76.2i40482GhView
Sequence
>TAMU_GH_TBh051O20r760 ID=TAMU_GH_TBh051O20r760; Name=TAMU_GH_TBh051O20r760; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTTCGCAAGATTCAACCTCATGTTATAGGAATGCAACACTTGAAACAGGT
[A/C]TTGTAAATCTTTTAGATGTTGGTCCATGATAGTGCTTTTGACCAT
CATGT