TAMU_GH_TBh048L10r416, TAMU_GH_TBh048L10r416 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh048L10r416
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i40167Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:46922582..46922582 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:49361181..49361281 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:10300608..10300708 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:44339965..44340065 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:45734876..45734976 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:48904208..48904308 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:51759009..51759109 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:50722299..50722399 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:51878548..51878648 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:49659591..49659691 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:48629512..48629612 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:49843300..49843400 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:49726788..49726888 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:52523103..52523203 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:50322059..50322159 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:51836345..51836445 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:47476988..47477088 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:47661012..47661112 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:37018630..37018730 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:34539171..34539271 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:48991870..48991970 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:33678601..33678701 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:32625158..32625258 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A89.16i40167GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A87.5i40167GhView
Sequence
>TAMU_GH_TBh048L10r416 ID=TAMU_GH_TBh048L10r416; Name=TAMU_GH_TBh048L10r416; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATTTTCCACTTCTCCATCTAATATAATTCTTAGCAACCAAACAGAATCAA
[A/G]AAGTCTATTTTTCCTCCGCATTTTAAGAAACCAAAGAGAGGCATC
AGAAG