TAMU_GH_TBh039B01f202, TAMU_GH_TBh039B01f202 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh039B01f202
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i39094Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:5525004..5525004 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:5664332..5664432 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:51817404..51817503 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:1746556..1746656 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:5704885..5704985 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:5749820..5749920 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:5659795..5659895 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:5770026..5770126 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:5734006..5734106 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:5593853..5593953 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:5582381..5582481 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:5592294..5592393 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:5688191..5688291 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:5904347..5904447 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:5593169..5593269 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:5539534..5539634 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:5410038..5410138 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:5327059..5327159 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:5561124..5561224 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:4908501..4908601 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:3684855..3684955 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A37.9i39094GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A38.7i39094GhView
Sequence
>TAMU_GH_TBh039B01f202 ID=TAMU_GH_TBh039B01f202; Name=TAMU_GH_TBh039B01f202; organism=Gossypium sp.; type=genetic_marker; length=105bp
CGAGTGAAACCATAAAATATCTAAATGGTCCACATGGAGGGTATATTGGT
[A/C]TTAAACATTTCATCTCCTTGTAACCCCTTTTTCTTATTTATGTAT
TAGAA