TAMU_GH_TBh033M23r316, TAMU_GH_TBh033M23r316 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh033M23r316
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i58704Gb
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:3115835..3115835 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018215.1chromosomeCM018215.1:3192328..3192428 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:3480602..3480702 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:3162182..3162282 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:3588856..3588956 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:57542042..57542142 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:4615043..4615143 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold732.1supercontigscaffold732.1:643845..643945 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1464.1supercontigscaffold1464.1:297745..297845 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold34_A01supercontigscaffold34_A01:52729..52829 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D01chromosomeD01:2972843..2972943 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:3430127..3430228 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:3749884..3749984 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:3234595..3234695 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:3562275..3562375 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:3425364..3425464 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:3745893..3745993 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:3287299..3287399 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:3694297..3694397 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:3565519..3565619 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:3469600..3469700 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:3591104..3591204 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:3452317..3452417 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:3465864..3465964 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:4029330..4029430 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:3324247..3324347 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:3577043..3577143 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:3523792..3523892 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:3496942..3497042 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:3743407..3743507 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:3619486..3619586 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:3577718..3577818 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:3146354..3146454 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:3325612..3325712 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:2878397..2878497 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:2941679..2941779 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:3547798..3547898 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x TM-1, F2 (2015 SNP)AD_ch15_Dt.01N/A101.78i58704GbView
Sequence
>TAMU_GH_TBh033M23r316 ID=TAMU_GH_TBh033M23r316; Name=TAMU_GH_TBh033M23r316; organism=Gossypium sp.; type=genetic_marker; length=105bp
GGTGGTACACTCGATATCTCTATTGCATTGGTTTTCTCATCAACTTGATC
[A/G]ACTTCTTCGGTTTCCACCTTAGGCTCAATTGCTGTTTTTTCCACT
GTGAC