TAMU_GH_TBh030N09f316, TAMU_GH_TBh030N09f316 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh030N09f316
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i38136Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:7575642..7575642 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:7757865..7757965 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:49745395..49745495 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:5731458..5731558 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:4818616..4818716 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:7972281..7972381 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:7948920..7949020 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:7784192..7784292 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:7954066..7954166 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:7894983..7895083 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:7687533..7687633 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:7626705..7626805 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:7790680..7790780 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:7853949..7854049 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:7619105..7619205 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:8122403..8122503 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:7658631..7658731 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:7809326..7809426 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:7369187..7369287 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:7270512..7270612 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:7980382..7980482 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:6743970..6744070 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:5036198..5036298 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:142884499..142884600 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch26_Dt.12N/A14.02i38136GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A44.83i38136GhView
30-153 x sGK9708, RIL (2017)AD_ch26_Dt.12N/A72.82i38136GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A45.8i38136GhView
Sequence
>TAMU_GH_TBh030N09f316 ID=TAMU_GH_TBh030N09f316; Name=TAMU_GH_TBh030N09f316; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTAATGAAAAGTAAAAGAAAACTTAAACCAATAGGCATTTTACTAAGTTA
[C/T]TCTATTTTTGCACATTAGATGCACAAAAATCCCCACCTCGTTAAA
GGGAC