TAMU_GH_TBh028L09f621, TAMU_GH_TBh028L09f621 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh028L09f621
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i37870Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:85623668..85623768 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:89356586..89356686 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:8259246..8259346 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:70563911..70564011 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:89952197..89952297 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:89096907..89097007 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:88624442..88624542 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:85483864..85483964 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:84985196..84985296 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:86994246..86994346 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:88792486..88792586 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:91532730..91532830 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:87008285..87008385 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:91095773..91095873 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:93685801..93685901 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch07_At.07N/A50.12i37870GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch07_At.07N/A44.6i37870GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch07_At.07N/A54.9i37870GhView
Sequence
>TAMU_GH_TBh028L09f621 ID=TAMU_GH_TBh028L09f621; Name=TAMU_GH_TBh028L09f621; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTTTGGAGAATTTCTATCCATTTCTCTTCTGAAATATCATCTCTCCTTTG
[A/C]ATCACCATCTCTTCTTTTAATGGAGAGTAACCTTCGGAGAAAACC
CGATA