TAMU_GH_TBh028L05r327, TAMU_GH_TBh028L05r327 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh028L05r327
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i37866Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeChr12:1439020..1439020 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018206.1chromosomeCM018206.1:101034320..101034420 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:97010234..97010334 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:1356653..1356753 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:1883180..1883280 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr10chromosomeAt_chr10:47217167..47217267 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:90678962..90679062 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:107850341..107850441 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:109360875..109360975 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:107954841..107954941 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:105910006..105910106 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:101192192..101192292 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:106134741..106134841 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:103540382..103540482 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:112206959..112207059 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:104057844..104057944 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:109735604..109735704 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:1658139..1658239 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:1632502..1632602 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:1481980..1482079 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:1161932..1162032 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:1063622..1063722 +Gossypium gossypioides (D6) genome ISU_v1n/a
F04chromosomeF04:1447037..1447137 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A1.61SNPi37866GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A4.27i37866GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A1.6i37866GhView
Sequence
>TAMU_GH_TBh028L05r327 ID=TAMU_GH_TBh028L05r327; Name=TAMU_GH_TBh028L05r327; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTGCTTCTGCTTGCAATTGCTACACTTGCTAAATCTGGATCTCTTAATTC
[A/C]GTACGTGAATGCTTTTCCAATACTGCCTCTATTGCTACACTAGCT
TTATT