TAMU_GH_TBh027F13r46, TAMU_GH_TBh027F13r46 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh027F13r46
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i37717Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:9619070..9619070 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018221.1chromosomeCM018221.1:9659912..9660007 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:9718547..9718642 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr1chromosomeDt_chr1:45251569..45251664 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:9623242..9623337 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:10104245..10104340 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:9685958..9686053 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:10055762..10055857 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:9946577..9946672 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:10065869..10065964 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:9836928..9837023 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:10170858..10170953 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:10243262..10243357 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:10033085..10033180 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:10227675..10227770 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:43864335..43864430 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr01chromosomechr01:8910436..8910530 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:8843174..8843269 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:9877620..9877715 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch16_Dt.07N/A78.27SNPi37717GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch16_Dt.07N/A2.29i37717GhView
30-153 x sGK9708, RIL (2017)AD_ch16_Dt.07N/A74.01i37717GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch16_Dt.07N/A90.6i37717GhView
Sequence
>TAMU_GH_TBh027F13r46 ID=TAMU_GH_TBh027F13r46; Name=TAMU_GH_TBh027F13r46; organism=Gossypium sp.; type=genetic_marker; length=100bp
TCCAAAAAACCTCCCCCCATCCCCACCTTCACTCCCCGTATTTGG[C/T]
CACCTCCATCTCCTCGAAACTCTTGACTTCCGTTTCTACCACCATCTTTC