TAMU_GH_TBh027D17r169, TAMU_GH_TBh027D17r169 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh027D17r169
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i37704Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:10656487..10656487 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:10765536..10765636 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:10771997..10772096 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:49388698..49388798 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:22199335..22199435 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:10903164..10903264 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:11499936..11500036 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:11140968..11141068 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:11484725..11484825 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:11006301..11006401 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:10917092..10917192 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:10726847..10726947 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:11441417..11441517 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:11136626..11136726 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:10964957..10965057 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:11637652..11637752 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D06chromosomeD06:11624941..11625041 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:10558256..10558356 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:11128598..11128698 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:9489528..9489628 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:8834707..8834807 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:11407385..11407485 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A61.25SNPi37704GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A67.5i37704GhView
Sequence
>TAMU_GH_TBh027D17r169 ID=TAMU_GH_TBh027D17r169; Name=TAMU_GH_TBh027D17r169; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTCAACTTGGAATTAATCGTCAAAGAAACTACGAAAGGGAAATTTAAACA
[C/T]GGGACGAGTTGAAGCTAATGATGCAAAAGCGTTTCATTCCTTCTC
ATTAC