TAMU_GH_TBb120K04r356, TAMU_GH_TBb120K04r356 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb120K04r356
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i35086Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:107465065..107465165 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:93546157..93546257 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr2chromosomeDt_chr2:48999595..48999695 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:94409201..94409301 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:111946986..111947086 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:112546633..112546733 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:110236549..110236649 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:107023649..107023749 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:109943263..109943363 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:109915197..109915297 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:108536142..108536242 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:115956023..115956123 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:106047176..106047276 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:113802257..113802357 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:117172042..117172142 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:5808046..5808146 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2017)AD_ch01_At.01N/A38.29i35086GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A31.7i35086GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A36.7i35086GhView
Sequence
>TAMU_GH_TBb120K04r356 ID=TAMU_GH_TBb120K04r356; Name=TAMU_GH_TBb120K04r356; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGAACCCTCACAATCACAAGTCTCCATCAGCAACACTAGGTTAAGTTTTT
[A/G]GTTGTACTGTTAACTTATTAAGAGATTATTCTACGAGCAGAGCCT
TACAT