TAMU_GH_TBb115H18f695, TAMU_GH_TBb115H18f695 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb115H18f695
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i34544Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:1326890..1326890 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:1351465..1351565 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56081396..56081496 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:11578215..11578314 +Gossypioides kirkii genome ISU_v3n/a
D10_12chromosomeD10_12:1155906..1156006 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:124759040..124759140 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3276.1supercontigscaffold3276.1:46485..46585 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:1350993..1351093 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:1357550..1357650 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:1341163..1341263 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:1365460..1365560 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:1393224..1393324 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:1341455..1341555 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:1298486..1298586 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:1266834..1266934 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:1277560..1277660 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:1349857..1349957 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:1427555..1427655 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:1397416..1397516 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:1344331..1344431 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:1269151..1269251 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:1198428..1198528 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:1211197..1211297 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:1262080..1262180 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:1177800..1177900 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:910354..910454 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:1228300..1228400 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A10.62i34544GhView
20-153 x sGK9708, RIL (2017)AD_ch26_Dt.12N/A105.29i34544GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A17.05i34544GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A9.2i34544GhView
Sequence
>TAMU_GH_TBb115H18f695 ID=TAMU_GH_TBb115H18f695; Name=TAMU_GH_TBb115H18f695; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTTACTATGTTGCATCAATTTCGAGTGAGGTACACTTAGACTATGATTAT
[A/C]CTTTTAGAATGACTTGAGCATTCAACCTCACATATGTTACACTCA
TCAAC