TAMU_GH_TBb112C22f459, TAMU_GH_TBb112C22f459 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb112C22f459
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i34179Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:3924854..3924854 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018206.1chromosomeCM018206.1:4974839..4974939 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:4939729..4939829 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:51855505..51855605 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:4591803..4591903 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:5038316..5038416 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:4891179..4891279 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:5005725..5005825 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:5421871..5421971 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:4675674..4675774 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:5159544..5159644 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:5013619..5013719 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:5032444..5032544 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:4951851..4951951 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:5184048..5184148 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:5284436..5284536 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:4829622..4829722 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr_09chromosomeChr_09:4198919..4199021 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:4251384..4251484 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E05chromosomeE05:5204900..5205000 +Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A46.69i34179GhView
20-153 x sGK9708, RIL (2017)AD_ch05_At.05N/A9.8i34179GhView
Sequence
>TAMU_GH_TBb112C22f459 ID=TAMU_GH_TBb112C22f459; Name=TAMU_GH_TBb112C22f459; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATGTATAAATTTCTATATGATAAGTTGCTTTCATTTCCCCTTGTAATTG
[C/T]AATAGCCAACAGAATTCATCACGTATTATGACATGGAGGCAGTGT
AGAAT