USDA_SNP0378, USDA_SNP0378 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0378
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00086Gh
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03chromosomeChr03:3577218..3577218 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018217.1chromosomeCM018217.1:3563292..3563354 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:3596118..3596180 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016615.1chromosomeCM016615.1:4996439..4996501 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:25826174..25826236 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:3548174..3548236 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:3601746..3601808 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:3546446..3546508 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:3641873..3641935 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:3523445..3523507 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:3566056..3566118 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:3526614..3526676 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:3676989..3677051 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:3562752..3562814 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:3738026..3738088 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:3474251..3474313 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
E02chromosomeE02:4836049..4836111 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>USDA_SNP0378 ID=USDA_SNP0378; Name=USDA_SNP0378; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTAAC[G/T]TAATAAAATCCACCAAAACAGAACAGAACAAAACC
AGCTGAAAAATTTTTGG