TAMU_GH_TBb099E19f506, TAMU_GH_TBb099E19f506 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb099E19f506
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i32888Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:39031637..39031637 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D12chromosomeD12:44465555..44465655 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:41353223..41353323 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:18254908..18255008 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:13575762..13575860 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:37206710..37206810 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:40688964..40689064 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:43744044..43744144 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:42922620..42922720 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:43715839..43715939 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:41570785..41570885 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:40600128..40600228 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:41886096..41886196 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:41759057..41759157 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:44111045..44111145 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:42444776..42444876 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:43685595..43685695 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A63.88i32888GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A69.17i32888GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A66.4i32888GhView
Sequence
>TAMU_GH_TBb099E19f506 ID=TAMU_GH_TBb099E19f506; Name=TAMU_GH_TBb099E19f506; organism=Gossypium sp.; type=genetic_marker; length=105bp
ACATGAGAGATAACCAAAAATAGGATTTGACCATTTTCTTATAATTAGAA
[G/T]AAAAAGTGAATTAACAGACATTTGCCACCAATAATGTCATTGACT
GCATT