TAMU_GH_TBb079E04f612, TAMU_GH_TBb079E04f612 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb079E04f612
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i57171Gb
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:70934460..70934560 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:58348057..58348157 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:63569642..63569742 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:40624281..40624381 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:60694196..60694296 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:57863108..57863208 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:58651162..58651262 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:58003123..58003223 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:56394754..56394854 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:58746531..58746631 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:55091698..55091798 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:61049641..61049741 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:64278841..64278941 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:59918484..59918584 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:63552900..63553000 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:83079512..83079612 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
13-79 x TM-1, F2 (2015 SNP)AD_ch06_At.06N/AN/A60.36i57171GbView
2Suvin x BCS23-18-7, F2 (2019)AD_ch06_At.06N/AAD_chr.0628.52i57171GbView
Sequence
>TAMU_GH_TBb079E04f612 ID=TAMU_GH_TBb079E04f612; Name=TAMU_GH_TBb079E04f612; organism=Gossypium sp.; type=genetic_marker; length=105bp
ACAATTGTCATAGTACAAGGAACTTGGGATCCTTTTGTGGCATGTAATGA
[C/T]AGAATAGGCTCTTGAGGTTGTTCTCCTTCCATTGGAGGTTATTCT
AACTC