TAMU_GH_TBb076N23f294, TAMU_GH_TBb076N23f294 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb076N23f294
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i30609Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:4368705..4368705 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D12chromosomeD12:4588693..4588793 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:4495205..4495305 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:53007495..53007595 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:4195665..4195765 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:22636790..22636890 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:4395928..4396028 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:4588117..4588217 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:4520571..4520671 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:4607503..4607603 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:4571097..4571197 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:4465421..4465521 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:4410575..4410675 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:4503566..4503666 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:4478280..4478380 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:4487877..4487977 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:4741694..4741794 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:4402758..4402858 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:4362671..4362770 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:4333444..4333544 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:4345367..4345467 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:4124024..4124124 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:3988055..3988155 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A35.64i30609GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A40.15i30609GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A37.6i30609GhView
Sequence
>TAMU_GH_TBb076N23f294 ID=TAMU_GH_TBb076N23f294; Name=TAMU_GH_TBb076N23f294; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTTATCTTCATCTTCTTCTTCGTCGCCAAAATGAGATGCATGATCGAAAG
[A/G]TTGTGTTTACTGTAAATGTGTTGTTTCTTTGGTTTGATTATATTT
ATAAA