TAMU_GH_TBb076N20r263, TAMU_GH_TBb076N20r263 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb076N20r263
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i30607Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:17746000..17746000 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D02chromosomeD02:19863253..19863353 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:18517770..18517870 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00025257_CRI-A2_v1.0.a1chromosometig00025257_CRI-A2_v1.0.a1:48801..48900 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr5chromosomeDt_chr5:63856485..63856585 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:19544240..19544340 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:19181160..19181260 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:18684632..18684732 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:19117221..19117321 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:19207623..19207723 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:18976945..18977045 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:18422415..18422515 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:32240923..32241022 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:19786101..19786201 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:33763566..33763665 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:18800698..18800798 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:19569624..19569724 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:76068949..76069048 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:19061492..19061592 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:14592246..14592346 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:13172897..13172997 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:18977715..18977814 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:13208442..13208542 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:10885740..10885840 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:14678689..14678789 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2017)AD_ch14_Dt.02N/A103.78i30607GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch14_Dt.02N/A58.2i30607GhView
Sequence
>TAMU_GH_TBb076N20r263 ID=TAMU_GH_TBb076N20r263; Name=TAMU_GH_TBb076N20r263; organism=Gossypium sp.; type=genetic_marker; length=105bp
CAACGTAACCGTATACCAAGCCATACTTTCCATTACAATCCATTACATTT
[C/T]CATTTCAAAACTACTTTAATTAATCACATAATTATTCATGTTTAT
ATAAT