TAMU_GH_TBb070E14f204, TAMU_GH_TBb070E14f204 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb070E14f204
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i30004Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:34887980..34887980 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D08chromosomeD08:40779993..40780093 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:38009781..38009881 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:34424074..34424174 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr4chromosomeDt_chr4:13222063..13222163 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:37520007..37520107 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:40416442..40416542 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:41430488..41430588 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:40170535..40170635 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:37865312..37865412 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:37984633..37984733 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:39628174..39628274 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:39199196..39199296 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:40937224..40937324 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:38480454..38480554 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:40728378..40728478 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:35063059..35063159 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:36721843..36721943 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:38765460..38765560 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch24_Dt.08N/A83.47SNPi30004GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch24_Dt.08N/A69.69i30004GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch24_Dt.08N/A87.9i30004GhView
Sequence
>TAMU_GH_TBb070E14f204 ID=TAMU_GH_TBb070E14f204; Name=TAMU_GH_TBb070E14f204; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTTTTCAAACTTAATTTATGTTTAGGATTAATATTTGGTGTAGGAATTTT
[C/T]GTGTAGTTGAGACTTTTAGAATTGAAAACTAGGGCTTTTGTACAA
TCTAC