TAMU_GH_TBb066D24r373, TAMU_GH_TBb066D24r373 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb066D24r373
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i29617Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeChr12:4354949..4354949 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
A05chromosomeA05:95401643..95401743 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:97715228..97715328 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:93404495..93404595 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:59378149..59378249 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:87077301..87077401 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:104212858..104212958 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:105825793..105825893 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:104315769..104315869 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:102244852..102244952 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:97750711..97750811 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:102656590..102656690 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:99963601..99963701 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:108407096..108407196 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:100602004..100602104 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:106090177..106090277 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:5510144..5510244 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:5413986..5414086 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E04chromosomeE04:6984549..6984649 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:4365120..4365220 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A27.13SNPi29617GhView
20-153 x sGK9708, RIL (2017)AD_ch05_At.05N/A81.6i29617GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A25.65i29617GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A24.9i29617GhView
Sequence
>TAMU_GH_TBb066D24r373 ID=TAMU_GH_TBb066D24r373; Name=TAMU_GH_TBb066D24r373; organism=Gossypium sp.; type=genetic_marker; length=105bp
GAAAATTATGTTTTCTGTAAAGACAGAAGTTTGATTTAGTTCTTGACTTG
[C/T]TAACGTAAAAGCAACAACTCTTCTTTCTCTTTTCACATTGTTAAG
AAGAA