TAMU_GH_TBb064I08r461, TAMU_GH_TBb064I08r461 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb064I08r461
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i29416Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:45351322..45351322 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D12chromosomeD12:51100593..51100693 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:47720463..47720563 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:11885455..11885555 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:44340755..44340855 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:47321971..47322071 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:50147639..50147739 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:49167045..49167145 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:50216152..50216252 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:48004596..48004696 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:46988937..46989037 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:48205744..48205844 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:48096181..48096281 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:50832116..50832216 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D12chromosomeD12:50223155..50223255 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:45893961..45894061 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:32571456..32571555 -Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A82i29416GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A90.11i29416GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A85.3i29416GhView
Sequence
>TAMU_GH_TBb064I08r461 ID=TAMU_GH_TBb064I08r461; Name=TAMU_GH_TBb064I08r461; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTGTTATATTAGTGAAAAATACGCCTTGTAGGACACGTTTTCAAGTCAAC
[A/G]GTAACTTTTCCCCAATAATTACAATCTCAATGTCTATAATACCCC
CAACA