TAMU_GH_TBb063E17f583, TAMU_GH_TBb063E17f583 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb063E17f583
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i29290Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:32613643..32613743 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:31420724..31420824 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:32145635..32145735 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr9chromosomeDt_chr9:40336982..40337082 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:29513016..29513116 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:31528050..31528150 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:31354614..31354714 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:32456385..32456485 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:31560298..31560398 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:30218585..30218685 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:31756615..31756715 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:31905166..31905266 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:32333290..32333390 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:31588695..31588795 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:32906997..32907097 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:33178221..33178322 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:32547490..32547590 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A76.29SNPi29290GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A9.58i29290GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A92.37i29290GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A69.3i29290GhView
Sequence
>TAMU_GH_TBb063E17f583 ID=TAMU_GH_TBb063E17f583; Name=TAMU_GH_TBb063E17f583; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTCATGAATTCCTTAATCGTAAATCGAACAAAGGATCACCTTCAAATAAC
[A/G]TTTAAAGCCCACTCTGATACTAATTGAAAAATAATTAGTTTGCCA
ATATG