TAMU_GH_TBb058L11r51, TAMU_GH_TBb058L11r51 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb058L11r51
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i28788Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:9251357..9251357 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D06chromosomeD06:10254012..10254112 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:9313994..9314094 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:9368211..9368311 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr10chromosomeDt_chr10:20696157..20696257 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:9373480..9373580 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:10004450..10004550 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:9689139..9689239 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:9989280..9989380 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:9498559..9498659 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:9465573..9465673 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:9291411..9291511 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:9938260..9938360 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017706.1chromosomeCM017706.1:9510535..9510635 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:10128435..10128535 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:9154433..9154533 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:85371329..85371429 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:9762397..9762497 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:5924544..5924644 +Gossypium gossypioides (D6) genome ISU_v1n/a
F06chromosomeF06:10531713..10531813 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A61.7SNPi28788GhView
20-153 x sGK9708, RIL (2017)AD_ch25_Dt.06N/A53.13i28788GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A68i28788GhView
Sequence
>TAMU_GH_TBb058L11r51 ID=TAMU_GH_TBb058L11r51; Name=TAMU_GH_TBb058L11r51; organism=Gossypium sp.; type=genetic_marker; length=105bp
TACGGTCAACAACATTCTTTGAGTGAATATAAATCTAAAGTTTTAAAGTT
[A/C]GAAACTTAAACGGAACAATTGAGTCCTTCCAACCATCAGTTTAAA
AGTTT