TAMU_GH_TBb057N12r155, TAMU_GH_TBb057N12r155 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb057N12r155
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i28702Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:42401506..42401506 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D13chromosomeD13:29510848..29510948 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D12chromosomeD12:48151862..48151962 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:26969825..26969925 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:44710467..44710566 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:14876430..14876529 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:41498822..41498922 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:23466398..23466498 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:26253062..26253162 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:44260834..44260934 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:47254555..47254655 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:28219525..28219625 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:46301931..46302031 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:28473491..28473591 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:47228459..47228559 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:26505408..26505508 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D12chromosomeD12:45010619..45010719 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold127supercontigScaffold127:50750..50850 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D12chromosomeGbar_D12:43998178..43998277 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:26686961..26687061 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D12chromosomeD12:45314456..45314556 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:26971993..26972093 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:45183156..45183256 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:28981322..28981422 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017660.1chromosomeCM017660.1:47754339..47754439 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:45839589..45839689 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:28755843..28755943 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D12chromosomeD12:47223142..47223242 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:42914604..42914704 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
13-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A82.01i28702GhView
Sequence
>TAMU_GH_TBb057N12r155 ID=TAMU_GH_TBb057N12r155; Name=TAMU_GH_TBb057N12r155; organism=Gossypium sp.; type=genetic_marker; length=105bp
GCTATTTGAGCATGTTATATACATAAATGATATGGGATGGAGAGGAGGTG
[A/G]AGGACAATAAAGTATATGAATGAATTGTATATAATTGGTTATATG
CCTGA