TAMU_GH_TBb057E07r297, TAMU_GH_TBb057E07r297 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb057E07r297
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i28633Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:21722758..21722758 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D05chromosomeD05:24453726..24453826 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:27195519..27195619 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:23075786..23075886 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:26108926..26109026 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:26645384..26645484 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:84220090..84220190 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:4724201..4724301 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:57998694..57998794 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:23551232..23551332 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:24114870..24114970 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:23748203..23748303 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:26036370..26036470 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:23146708..23146808 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:26061615..26061715 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:23591536..23591636 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:26946002..26946102 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:23462720..23462820 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:26009830..26009930 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:24874801..24874901 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2290supercontigScaffold2290:10538..10638 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:23345210..23345310 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:26461235..26461335 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:23249262..23249362 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:26489106..26489206 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:26767313..26767413 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:23407301..23407401 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:26144766..26144866 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:24075332..24075432 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:27395509..27395609 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:27805115..27805215 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:27022014..27022114 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:21899202..21899302 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:59525809..59525909 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:22421708..22421808 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:19858441..19858541 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:23102500..23102600 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:16329973..16330073 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:19175400..19175500 +Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:23097569..23097669 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A101.24SNPi28633GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A112.88i28633GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A94i28633GhView
Sequence
>TAMU_GH_TBb057E07r297 ID=TAMU_GH_TBb057E07r297; Name=TAMU_GH_TBb057E07r297; organism=Gossypium sp.; type=genetic_marker; length=105bp
CCAAAACCATTAGAAGCACTAGGCCGGGGAGGCCAGTTTGAAAAAGGATC
[C/T]AAATCATCAAAATTTGACAGTGATGATGTTCCAGCATTGAATTGC
TTCTC