TAMU_GH_TBb049J15r275, TAMU_GH_TBb049J15r275 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb049J15r275
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i27910Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:23731238..23731238 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
scaffold_1786supercontigscaffold_1786:6996..7096 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:30066796..30066896 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:30038909..30039009 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:30012271..30012369 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:25072666..25072766 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:28845761..28845861 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:29354362..29354462 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:36569538..36569638 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold5433.1supercontigscaffold5433.1:3640..3740 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold10929supercontigscaffold10929:314..414 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:28924681..28924781 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:28842962..28843062 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:29852701..29852801 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:29824804..29824904 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:28915117..28915217 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:28887195..28887295 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:25583270..25583370 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:27617118..27617218 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:25397954..25398054 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:29232470..29232570 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:25403662..25403762 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:29199839..29199939 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:25788476..25788576 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:29588631..29588731 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:25442378..25442478 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:28964511..28964611 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:30304235..30304335 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:30261577..30261677 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:30223487..30223587 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:29744836..29744936 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:56776946..56777046 +Gossypium anomalum (B1) genome NSF_v1n/a
chr09chromosomechr09:21709819..21709919 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:20223971..20224071 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:25138426..25138526 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:20103892..20103992 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:17763074..17763172 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:20644212..20644312 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:31924610..31924710 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:25495278..25495379 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A89.26SNPi27910GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A84.2i27910GhView
Sequence
>TAMU_GH_TBb049J15r275 ID=TAMU_GH_TBb049J15r275; Name=TAMU_GH_TBb049J15r275; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGGGGCTGGCTGGGCTGGGTTTACAAAGAAGCCATAATATGACAAACATG
[C/T]GATTTTCCAGTAGGGAATTGCGCGTGGAACATGATAATGCTCTTC
CATTA