TAMU_GH_TBb031F18r448, TAMU_GH_TBb031F18r448 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb031F18r448
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i26104Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:27515194..27515294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:26436582..26436682 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:26946796..26946896 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:57681263..57681363 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:24402963..24403063 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:26355505..26355605 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:104389237..104389337 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:26375458..26375558 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:27265654..27265754 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:26334213..26334313 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:25202262..25202362 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:26776679..26776779 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:26800360..26800460 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:26472777..26472877 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:27715195..27715295 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:28124924..28125024 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:27323548..27323648 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A97.93SNPi26104GhView
20-153 x sGK9708, RIL (2017)AD_ch05_At.05N/A54.06i26104GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A90.2i26104GhView
Sequence
>TAMU_GH_TBb031F18r448 ID=TAMU_GH_TBb031F18r448; Name=TAMU_GH_TBb031F18r448; organism=Gossypium sp.; type=genetic_marker; length=105bp
TAAATTTGAATCGGTCCTTGCATTCAAACTTGCATATATTTGCTTGTAAT
[C/T]ATATAGCCAGTGTTATAAAACTTACTAATTTTGGATAAGGCTTTT
CCATG