TAMU_GH_TBb029J02r640, TAMU_GH_TBb029J02r640 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb029J02r640
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25915Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:35993715..35993815 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:35051577..35051677 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:36059304..36059404 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr9chromosomeDt_chr9:37837797..37837897 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:32828360..32828460 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:34956058..34956158 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:34683202..34683302 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:35908149..35908249 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:34968141..34968241 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:33897729..33897829 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:35440192..35440292 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:34999180..34999281 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:36210186..36210286 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:35288133..35288233 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:36332964..36333064 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:37395145..37395245 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:37104692..37104792 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A67.24SNPi25915GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A60i25915GhView
Sequence
>TAMU_GH_TBb029J02r640 ID=TAMU_GH_TBb029J02r640; Name=TAMU_GH_TBb029J02r640; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTTCTCATCTTTGCCTGTGGTTTTTTCCTGAAATTGTCTCCACATAAAAT
[C/T]TGTGTTTTATTTTTTCTTTTCTTTCTGCTTTGCGATCGTTCTATA
TTACC