TAMU_GH_TBb027J18f32, TAMU_GH_TBb027J18f32 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb027J18f32
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25715Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:29809283..29809364 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:28673014..28673095 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:29151088..29151169 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:87808991..87809072 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:34446470..34446551 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:26703623..26703704 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:28725990..28726071 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:28647200..28647281 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:29627065..29627146 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:28683635..28683716 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:27444384..27444465 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:29060642..29060723 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:29027414..29027495 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:29426425..29426506 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:28792225..28792306 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:30065536..30065617 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:30001812..30001893 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:29541539..29541620 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F05chromosomeF05:25346751..25346832 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:98052765..98052846 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A88.48SNPi25715GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A84.2i25715GhView
Sequence
>TAMU_GH_TBb027J18f32 ID=TAMU_GH_TBb027J18f32; Name=TAMU_GH_TBb027J18f32; organism=Gossypium sp.; type=genetic_marker; length=86bp
ACAATGAGACTAATGTGCAAAGTGAAATGCA[C/T]GAGGACACTGAAGA
ACTCAATGCTCTGCTTTATTCCGATGATGATAGTGA