TAMU_GH_TBb027G22f553, TAMU_GH_TBb027G22f553 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb027G22f553
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25691Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A03chromosomeA03:6402657..6402757 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018204.1chromosomeCM018204.1:6412285..6412385 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:105399187..105399287 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr5chromosomeAt_chr5:5546942..5547042 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A03chromosomeA03:5349597..5349697 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A03chromosomeGhir_A03:7198399..7198499 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A03chromosomeA03:6776890..6776990 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A03chromosomeA03:7147641..7147741 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A03chromosomeA03:6563116..6563216 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A03chromosomeGbar_A03:6286810..6286910 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A03chromosomeA03:6532141..6532241 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017612.1chromosomeCM017612.1:6760568..6760668 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017638.1chromosomeCM017638.1:7199226..7199326 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017690.1chromosomeCM017690.1:6727553..6727653 +Gossypium darwinii (AD5) genome HGS_v1.1
A03chromosomeA03:7242066..7242166 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr02chromosomeChr02:6258919..6259019 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:111805604..111805704 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/AN/A90.77SNPi25691GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch03_At.03N/AN/A3.06i25691GhView
3Suvin x BCS23-18-7, F2 (2019)AD_ch03_At.03N/AAD_chr.031.86i25691GhView
4DS-28 x SBYF-425, RIL (2022)AD_ch03_At.03N/AN/A22.08i25691GhView
53-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/AN/A101.93i25691GhView
6Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/AN/A74.6i25691GhView
Sequence
>TAMU_GH_TBb027G22f553 ID=TAMU_GH_TBb027G22f553; Name=TAMU_GH_TBb027G22f553; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTCTCATCGTCCCCATCTTCCTCACTTCTGTAGTTTTCTCCTATACCTTG
[A/C]TCCTTAGATCCATCCATAGGGTCGTATTTGTTTGATGGAAAATTT
AGTAC