TAMU_GH_TBb021G22r335, TAMU_GH_TBb021G22r335 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb021G22r335
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25135Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:86078724..86078824 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:89713827..89713927 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:40869953..40870053 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:84527714..84527814 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:66500566..66500666 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:78648199..78648299 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:95996283..95996383 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:97488108..97488208 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:95925664..95925764 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:93998897..93998997 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:89686392..89686492 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:94761682..94761782 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:91572720..91572820 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:10311934..10312034 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:99971959..99972059 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017652.1chromosomeCM017652.1:10595770..10595870 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:92511823..92511923 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:10243596..10243696 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:97503946..97504046 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:14128430..14128530 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:14071578..14071678 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:40618814..40618914 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:10398870..10398971 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E04chromosomeE04:17293291..17293391 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:11956348..11956447 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:22782305..22782405 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A51.49SNPi25135GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A50.8i25135GhView
Sequence
>TAMU_GH_TBb021G22r335 ID=TAMU_GH_TBb021G22r335; Name=TAMU_GH_TBb021G22r335; organism=Gossypium sp.; type=genetic_marker; length=105bp
TCAATCCAGTGCTGGGTAAACACTTGCACACTTTTTTGTATTTGAAGGTC
[A/G]ATTGTTCACTGTACTGATGTTGAAGTAGGGTGGCCAAGAACCTGG
GTTTC