TAMU_GH_TBb017J20r590, TAMU_GH_TBb017J20r590 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb017J20r590
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i24722Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:5633079..5633079 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D12chromosomeD12:5862332..5862432 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:5777570..5777670 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:51709307..51709407 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:1859431..1859531 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:5810661..5810761 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:5860578..5860678 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:5768420..5768520 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:5880865..5880965 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:5844857..5844957 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:5707083..5707183 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:5695935..5696035 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:5703514..5703614 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:5741671..5741771 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:5798998..5799098 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:6015200..6015300 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:5701126..5701226 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:5631677..5631777 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A38.03i24722GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A43.13i24722GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A38.7i24722GhView
Sequence
>TAMU_GH_TBb017J20r590 ID=TAMU_GH_TBb017J20r590; Name=TAMU_GH_TBb017J20r590; organism=Gossypium sp.; type=genetic_marker; length=105bp
AAATTCTCACCCTCAAATTGCTTAAAATTAGCAATGTCATGCCTTAACTA
[A/G]ATGGTTTGACTAATTGGGAAAAGTATGTGTAAAAATTTCCCCGCT
AAGTC