TAMU_GH_TBb017J20f226, TAMU_GH_TBb017J20f226 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb017J20f226
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i24721Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:5459453..5459453 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D12chromosomeD12:5716099..5716199 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:5628973..5629073 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr8chromosomeDt_chr8:1711195..1711295 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:5669507..5669607 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:5714448..5714548 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:5625087..5625187 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:5734651..5734751 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:5698628..5698728 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:5558494..5558594 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:5547022..5547122 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:5556859..5556959 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:5590156..5590256 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:5652811..5652911 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:5868968..5869068 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:5527673..5527773 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:5474441..5474541 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr08chromosomeChr08:4854393..4854493 +Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A37.13i24721GhView
2DS-28 x SBYF-425, RIL (2022)AD_ch25_Dt.06N/A33.44i24721GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A38.7i24721GhView
Sequence
>TAMU_GH_TBb017J20f226 ID=TAMU_GH_TBb017J20f226; Name=TAMU_GH_TBb017J20f226; organism=Gossypium sp.; type=genetic_marker; length=105bp
CATTGTCATTCGCGCGTTCTATTGGGTCCTTATGCTTTTTATTTATTTCA
[G/T]ATTTGCCCTGAATTTATGTTTTAAAGTTCAATTTAGCCCCCTTTT
TGTTA