TAMU_GH_TBb015C13f163, TAMU_GH_TBb015C13f163 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb015C13f163
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i24482Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:3350503..3350503 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D05chromosomeD05:3765581..3765681 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:4212285..4212385 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:3463236..3463336 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:4174763..4174863 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:3360648..3360748 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:4121163..4121263 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:57139313..57139413 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:6110256..6110356 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:65781335..65781435 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:51310575..51310675 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:3605398..3605498 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:3727415..3727515 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:3739589..3739689 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:4207328..4207428 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:3544840..3544940 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:4082067..4082167 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:3650429..3650529 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:4185362..4185462 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:3510809..3510909 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:4589368..4589468 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:3634307..3634407 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:3871922..3872022 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:3783071..3783171 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:4331052..4331152 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:3606921..3607021 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:4202847..4202947 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:3808524..3808624 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:4239786..4239886 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:3620575..3620675 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:4139963..4140063 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:3674933..3675033 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:4316841..4316941 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:4512672..4512772 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:3995288..3995388 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:3386627..3386727 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:82065194..82065294 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:3478763..3478863 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:3285301..3285401 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:3647432..3647532 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:3623832..3623932 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:3300371..3300471 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:2678362..2678462 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:3244750..3244850 -Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:3500336..3500436 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:194384049..194384149 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch19_Dt.05N/A21.27i24482GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A190.22i24482GhView
Sequence
>TAMU_GH_TBb015C13f163 ID=TAMU_GH_TBb015C13f163; Name=TAMU_GH_TBb015C13f163; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGAAGTCCTTGTTTATAGCACTATATCCTAACATCTGAGGGGGCAAGACC
[C/T]GCCTTGCAAACTAAACATAAAACATCAGCACAAAACTGAAGTAGA
ACTAA