TAMU_GH_TBb012E03f62, TAMU_GH_TBb012E03f62 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb012E03f62
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i24198Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:16483357..16483457 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:16087299..16087399 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:16304117..16304217 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2081.1supercontigscaffold2081.1:30213..30313 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:14767043..14767143 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:16456865..16456965 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:15917389..15917489 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:16470697..16470797 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:16631818..16631918 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:15704190..15704290 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:16351373..16351473 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:16117694..16117794 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:16461902..16462003 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:15942119..15942219 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:16724680..16724780 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:17275413..17275513 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:16178744..16178844 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A149.56SNPi24198GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A139.9i24198GhView
3DS-28 x SBYF-425, RIL (2022)AD_ch05_At.05N/A16.3i24198GhView
Sequence
>TAMU_GH_TBb012E03f62 ID=TAMU_GH_TBb012E03f62; Name=TAMU_GH_TBb012E03f62; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATTTTAGTAATATTTTTCATGTTATTGACATATAACTTTAATAATTTGT
[C/T]TTATCTTAACCTTAAATCTTGAATTTTGAACCTTAACTCTCGAGC
TCTAA