UCD_Gh_Gh_Genomic_1041268, UCD_Gh_Gh_Genomic_1041268 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_Gh_Genomic_1041268
AliasUC_Gh_Gh_Genomic_1041268
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49458Gh
TypeSNP
SNP AllelesC/A
5' Flanking SequenceACTTTCCTACACAATTTCCATAGCACATATCATATTTAGCGCAATTCACG
3' Flanking SequenceTATTTTACATTTTATTTAGTTTAGTCCTATATTCCAAAAATTCACATTCA
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:7911088..7911088 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:7957280..7957380 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:8006351..8006450 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:52161660..52161760 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:22834509..22834609 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:7881724..7881824 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:8650310..8650410 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:8380279..8380379 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:8634632..8634732 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:8116345..8116445 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:8080823..8080923 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:7998925..7999025 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:8602899..8602999 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:8185110..8185210 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:8148919..8149019 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:8765332..8765432 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:7792965..7793064 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:8398638..8398738 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:7217240..7217340 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10chromosomeChr10:8575046..8575146 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:6021532..6021632 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:6449294..6449394 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr06chromosomeChr06:186835907..186836007 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch25_Dt.06N/A64.41SNPi49458GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch25_Dt.06N/A70.2i49458GhView
Sequence
>UCD_Gh_Gh_Genomic_1041268 ID=UCD_Gh_Gh_Genomic_1041268; Name=UCD_Gh_Gh_Genomic_1041268; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
ACTTTCCTACACAATTTCCATAGCACATATCATATTTAGCGCAATTCACG
[A/C]TATTTTACATTTTATTTAGTTTAGTCCTATATTCCAAAAATTCAC
ATTCA