UCD_Gh_Gh_Genomic_418464, UCD_Gh_Gh_Genomic_418464 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_Gh_Genomic_418464
AliasUC_Gh_Gh_Genomic_418464
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i49153Gh
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGAATGGATTTGCTAAAATTAATACTTTCAAAATACACGATTTTGAATTC
3' Flanking SequenceAATTCTAGGCTTGAAATAGGTGTTTTCGGACTAAAGTTTTCCTAAATGTA
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:47156035..47156035 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018221.1chromosomeCM018221.1:51178533..51178633 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:46554731..46554831 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold56.1supercontigscaffold56.1:362963..363063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:50291848..50291948 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:54390978..54391078 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:53632954..53633054 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:53931487..53931587 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:50403336..50403436 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:51544580..51544680 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:52254984..52255084 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:52023992..52024092 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:53056653..53056753 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:52170543..52170643 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:54483440..54483540 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:4919020..4919120 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:51005023..51005123 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:39039021..39039121 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr01chromosomeChr01:35698690..35698790 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:28157851..28157951 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:34837232..34837332 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch16_Dt.07N/A24.18SNPi49153GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch16_Dt.07N/A24.92i49153GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch16_Dt.07N/A27.3i49153GhView
Sequence
>UCD_Gh_Gh_Genomic_418464 ID=UCD_Gh_Gh_Genomic_418464; Name=UCD_Gh_Gh_Genomic_418464; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
GGAATGGATTTGCTAAAATTAATACTTTCAAAATACACGATTTTGAATTC
[A/G]AATTCTAGGCTTGAAATAGGTGTTTTCGGACTAAAGTTTTCCTAA
ATGTA